NCBI_GNO_87600001 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 NCBI_GNO_87600001 T14721_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
NCBI_GNO_87600001 CCHC ZF 334 351

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBI_GNO_24900010 Daphnia pulex NCBI_GNO_24900010 N 1.000
NCBI_GNO_1200073 Daphnia pulex NCBI_GNO_1200073 N 1.000
NCBI_GNO_278600001 Daphnia pulex NCBI_GNO_278600001 N 1.000
NCBI_GNO_520200001 Daphnia pulex NCBI_GNO_520200001 N 1.000
NCBI_GNO_6900015 Daphnia pulex NCBI_GNO_6900015 N 1.000
fgenesh1_pg.C_scaffold_889000001 Daphnia pulex fgenesh1_pg.C_scaffold_889000001 N 1.000
fgenesh1_pg.C_scaffold_79000076 Daphnia pulex fgenesh1_pg.C_scaffold_79000076 N 1.000
fgenesh1_pg.C_scaffold_231000002 Daphnia pulex fgenesh1_pg.C_scaffold_231000002 N 1.000
fgenesh1_pg.C_scaffold_56000077 Daphnia pulex fgenesh1_pg.C_scaffold_56000077 N 1.000
fgenesh1_pg.C_scaffold_189000020 Daphnia pulex fgenesh1_pg.C_scaffold_189000020 N 0.944
NCBI_GNO_138400002 Daphnia pulex NCBI_GNO_138400002 N 0.944
NCBI_GNO_20100005 Daphnia pulex NCBI_GNO_20100005 N 0.944
SNAP_00017676 Daphnia pulex SNAP_00017676 N 0.944
NCBI_GNO_5000074 Daphnia pulex NCBI_GNO_5000074 N 0.889
fgenesh1_pg.C_scaffold_153000026 Daphnia pulex fgenesh1_pg.C_scaffold_153000026 N 0.889
fgenesh1_pg.C_scaffold_57000009 Daphnia pulex fgenesh1_pg.C_scaffold_57000009 N 0.889
PTTG_10645 Puccinia triticina PTTG_10645 N 0.722
nasonia_NCBI_hmm26524 Nasonia vitripennis nasonia_NCBI_hmm26524 N 0.722