CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_10645
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_10645
T08481_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_10645T0
CCHC ZF
234
251
RLCFFCGNKGHIARECPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_09362
Puccinia triticina
PTTG_09362
N
0.889
PTTG_11204
Puccinia triticina
PTTG_11204
N
0.889
PTTG_05476
Puccinia triticina
PTTG_05476
N
0.833
PTTG_03581
Puccinia triticina
PTTG_03581
N
0.833
PTTG_03611
Puccinia triticina
PTTG_03611
N
0.833
PTTG_08960
Puccinia triticina
PTTG_08960
N
0.833
PTTG_05245
Puccinia triticina
PTTG_05245
N
0.778
PTTG_05127
Puccinia triticina
PTTG_05127
N
0.778
PTTG_10004
Puccinia triticina
PTTG_10004
N
0.778
PTTG_10464
Puccinia triticina
PTTG_10464
N
0.778
PTTG_10688
Puccinia triticina
PTTG_10688
N
0.778
PTTG_05387
Puccinia triticina
PTTG_05387
N
0.778
PTTG_04681
Puccinia triticina
PTTG_04681
N
0.778
PTTG_08329
Puccinia triticina
PTTG_08329
N
0.778
PTTG_09697
Puccinia triticina
PTTG_09697
N
0.778
PTTG_08980
Puccinia triticina
PTTG_08980
N
0.778
PTTG_05279
Puccinia triticina
PTTG_05279
N
0.778
PTTG_10706
Puccinia triticina
PTTG_10706
N
0.778
NCBI_GNO_1200073
Daphnia pulex
NCBI_GNO_1200073
N
0.722
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.722
NCBI_GNO_24900010
Daphnia pulex
NCBI_GNO_24900010
N
0.722
fgenesh1_pg.C_scaffold_889000001
Daphnia pulex
fgenesh1_pg.C_scaffold_889000001
N
0.722
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.722
fgenesh1_pg.C_scaffold_79000076
Daphnia pulex
fgenesh1_pg.C_scaffold_79000076
N
0.722
PTTG_10119
Puccinia triticina
PTTG_10119
N
0.722
fgenesh1_pg.C_scaffold_231000002
Daphnia pulex
fgenesh1_pg.C_scaffold_231000002
N
0.722
fgenesh1_pg.C_scaffold_56000077
Daphnia pulex
fgenesh1_pg.C_scaffold_56000077
N
0.722
PTTG_07232
Puccinia triticina
PTTG_07232
N
0.722
PTTG_09062
Puccinia triticina
PTTG_09062
N
0.722
PTTG_07053
Puccinia triticina
PTTG_07053
N
0.722
PTTG_05310
Puccinia triticina
PTTG_05310
N
0.722
NCBI_GNO_520200001
Daphnia pulex
NCBI_GNO_520200001
N
0.722
NCBI_GNO_6900015
Daphnia pulex
NCBI_GNO_6900015
N
0.722
NCBI_GNO_87600001
Daphnia pulex
NCBI_GNO_87600001
N
0.722
PTTG_01003
Puccinia triticina
PTTG_01003
N
0.722
NCBI_GNO_278600001
Daphnia pulex
NCBI_GNO_278600001
N
0.722
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.722
PTTG_07033
Puccinia triticina
PTTG_07033
N
0.722
PTTG_06885
Puccinia triticina
PTTG_06885
N
0.722
PTTG_06677
Puccinia triticina
PTTG_06677
N
0.722
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.722
PTTG_04497
Puccinia triticina
PTTG_04497
N
0.722