CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr8g142210
(
Medicago truncatula
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Medtr8g142210
T15107_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr8g142210.1
CCHC ZF
127
144
VSCYGCGKVGHYKNECPE
Links
Other
CCHC ZF
family RBPs
Other
Medicago truncatula
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm34574
Nasonia vitripennis
nasonia_NCBI_hmm34574
N
0.722
nasonia_NCBI_hmm280424
Nasonia vitripennis
nasonia_NCBI_hmm280424
N
0.722
nasonia_NCBI_hmm118164
Nasonia vitripennis
nasonia_NCBI_hmm118164
N
0.722
RO3G_17164
Rhizopus oryzae
RO3G_17164
N
0.722