CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm118164
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm118164
T08976_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm118164
CCHC ZF
166
183
GKCYNCGKVGHYKNECTR
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm280424
Nasonia vitripennis
nasonia_NCBI_hmm280424
N
1.000
nasonia_NCBI_hmm34574
Nasonia vitripennis
nasonia_NCBI_hmm34574
N
1.000
nasonia_NCBI_hmm340794
Nasonia vitripennis
nasonia_NCBI_hmm340794
N
0.944
nasonia_NCBI_hmm336794
Nasonia vitripennis
nasonia_NCBI_hmm336794
N
0.944
nasonia_NCBI_hmm110394
Nasonia vitripennis
nasonia_NCBI_hmm110394
N
0.889
nasonia_NCBI_hmm88784
Nasonia vitripennis
nasonia_NCBI_hmm88784
N
0.889
nasonia_NCBI_hmm139164
Nasonia vitripennis
nasonia_NCBI_hmm139164
N
0.833
nasonia_NCBI_hmm253074
Nasonia vitripennis
nasonia_NCBI_hmm253074
N
0.833
Medtr8g142210
Medicago truncatula
Medtr8g142210
N
0.722
nasonia_NCBI_hmm38244
Nasonia vitripennis
nasonia_NCBI_hmm38244
N
0.722
s_460584
Phytophthora sojae
s_460584
N
0.722
s_467293
Phytophthora sojae
s_467293
N
0.722