MDP0000438504 (Malus x domestica)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 MDP0000438504 T16058_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000438504 CCHC ZF 380 396

Links

Other CCHC ZF family RBPs
Other Malus x domestica RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000649942 Malus x domestica MDP0000649942 N 0.889
estExt_fgenesh2_pg.C_780005 Branchiostoma floridae estExt_fgenesh2_pg.C_780005 N 0.765
estExt_Genewise1Plus.C_41557 Agaricus bisporus estExt_Genewise1Plus.C_41557 N 0.722
estExt_Genewise1Plus.C_41602 Agaricus bisporus estExt_Genewise1Plus.C_41602 N 0.722
estExt_Genewise1Plus.C_50705 Agaricus bisporus estExt_Genewise1Plus.C_50705 N 0.722
estExt_Genewise1Plus.C_30058 Agaricus bisporus estExt_Genewise1Plus.C_30058 N 0.722
estExt_Genewise1Plus.C_50161 Agaricus bisporus estExt_Genewise1Plus.C_50161 N 0.722
estExt_Genewise1Plus.C_21362 Agaricus bisporus estExt_Genewise1Plus.C_21362 N 0.722
estExt_Genewise1Plus.C_170202 Agaricus bisporus estExt_Genewise1Plus.C_170202 N 0.722
estExt_Genewise1Plus.C_180004 Agaricus bisporus estExt_Genewise1Plus.C_180004 N 0.722
estExt_Genewise1Plus.C_190041 Agaricus bisporus estExt_Genewise1Plus.C_190041 N 0.722
estExt_Genewise1Plus.C_51714 Agaricus bisporus estExt_Genewise1Plus.C_51714 N 0.722
estExt_Genewise1Plus.C_240008 Agaricus bisporus estExt_Genewise1Plus.C_240008 N 0.722
estExt_Genewise1Plus.C_51735 Agaricus bisporus estExt_Genewise1Plus.C_51735 N 0.722
Genemark.5195_g Agaricus bisporus Genemark.5195_g N 0.722
Genemark.6596_g Agaricus bisporus Genemark.6596_g N 0.722
Genemark.9626_g Agaricus bisporus Genemark.9626_g N 0.722
gw1.14.564.1 Agaricus bisporus gw1.14.564.1 N 0.722
estExt_Genewise1Plus.C_90730 Agaricus bisporus estExt_Genewise1Plus.C_90730 N 0.722
estExt_Genewise1Plus.C_90717 Agaricus bisporus estExt_Genewise1Plus.C_90717 N 0.722
estExt_Genewise1Plus.C_70406 Agaricus bisporus estExt_Genewise1Plus.C_70406 N 0.722
estExt_Genewise1Plus.C_80108 Agaricus bisporus estExt_Genewise1Plus.C_80108 N 0.722
estExt_Genewise1Plus.C_81032 Agaricus bisporus estExt_Genewise1Plus.C_81032 N 0.722
estExt_Genewise1Plus.C_90531 Agaricus bisporus estExt_Genewise1Plus.C_90531 N 0.722
estExt_Genewise1Plus.C_160037 Agaricus bisporus estExt_Genewise1Plus.C_160037 N 0.722
estExt_Genewise1Plus.C_130360 Agaricus bisporus estExt_Genewise1Plus.C_130360 N 0.722
e_gw1.1.2997.1 Agaricus bisporus e_gw1.1.2997.1 N 0.722
e_gw1.1.2998.1 Agaricus bisporus e_gw1.1.2998.1 N 0.722
e_gw1.13.687.1 Agaricus bisporus e_gw1.13.687.1 N 0.722
e_gw1.14.590.1 Agaricus bisporus e_gw1.14.590.1 N 0.722
e_gw1.1.2995.1 Agaricus bisporus e_gw1.1.2995.1 N 0.722
e_gw1.12.818.1 Agaricus bisporus e_gw1.12.818.1 N 0.722
177549 Helobdella robusta 177549 N 0.722
e_gw1.10.1118.1 Agaricus bisporus e_gw1.10.1118.1 N 0.722
e_gw1.10.994.1 Agaricus bisporus e_gw1.10.994.1 N 0.722
e_gw1.11.822.1 Agaricus bisporus e_gw1.11.822.1 N 0.722
e_gw1.2.2558.1 Agaricus bisporus e_gw1.2.2558.1 N 0.722
e_gw1.3.1895.1 Agaricus bisporus e_gw1.3.1895.1 N 0.722
e_gw1.8.1265.1 Agaricus bisporus e_gw1.8.1265.1 N 0.722
e_gw1.9.1196.1 Agaricus bisporus e_gw1.9.1196.1 N 0.722
e_gw1.9.1197.1 Agaricus bisporus e_gw1.9.1197.1 N 0.722
estExt_Genewise1Plus.C_110267 Agaricus bisporus estExt_Genewise1Plus.C_110267 N 0.722
e_gw1.8.1263.1 Agaricus bisporus e_gw1.8.1263.1 N 0.722
e_gw1.6.1492.1 Agaricus bisporus e_gw1.6.1492.1 N 0.722
e_gw1.3.1898.1 Agaricus bisporus e_gw1.3.1898.1 N 0.722
e_gw1.5.2041.1 Agaricus bisporus e_gw1.5.2041.1 N 0.722
e_gw1.5.2042.1 Agaricus bisporus e_gw1.5.2042.1 N 0.722
e_gw1.6.1491.1 Agaricus bisporus e_gw1.6.1491.1 N 0.722
estExt_Genewise1Plus.C_150138 Agaricus bisporus estExt_Genewise1Plus.C_150138 N 0.722