CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc06343
(
Meloidogyne incognita
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Minc06343
T16112_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc06343
CCHC ZF
162
179
SQCYKCGMIGHISRDCRK
Links
Other
CCHC ZF
family RBPs
Other
Meloidogyne incognita
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc13978
Meloidogyne incognita
Minc13978
N
0.944
Minc01889
Meloidogyne incognita
Minc01889
N
0.833
Minc00058
Meloidogyne incognita
Minc00058
N
0.833
NCBI_GNO_14600006
Daphnia pulex
NCBI_GNO_14600006
N
0.722
Minc09197
Meloidogyne incognita
Minc09197
N
0.722
Minc12443
Meloidogyne incognita
Minc12443
N
0.722