CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa016115m
(
Prunus persica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ppa016115m
T16235_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa016115m
CCHC ZF
120
137
TGCYYCGQPGHFWKDCPL
Links
Other
CCHC ZF
family RBPs
Other
Prunus persica
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa026182m
Prunus persica
ppa026182m
N
0.944
ppa021588m
Prunus persica
ppa021588m
N
0.944
ppa022673m
Prunus persica
ppa022673m
N
0.944
ppa026240m
Prunus persica
ppa026240m
N
0.889
ppa024392m
Prunus persica
ppa024392m
N
0.889
ppa016726m
Prunus persica
ppa016726m
N
0.833
ppa019720m
Prunus persica
ppa019720m
N
0.778
EFA75926.1
Polysphondylium pallidum
EFA75926.1
N
0.722