CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
XM_002875141.1
(
Arabidopsis lyrata
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Al_scaffold_0005_243
T18084_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0005_243
KH
19
79
VYRYLCPVRKAGSIIGRGGEIAKQIRSETKANMRINEALPGCDERVVTIYSNSEETNRIED
Al_scaffold_0005_243
KH
122
190
TVRMLVPSDQIGCLIGKGGQVIQKLRNDTNAQIRVINDNLPICALALSHDELLQIIGDPSAVREALYQV
Al_scaffold_0005_243
KH
245
301
SICFICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDEDDDCIIFISAKEFFE
Al_scaffold_0005_243
KH
331
398
STRVLIPSSQVGCLIGKGGALISEMRSVTKANIRIFQGEDVPRIARENEEMVQITGSLDAAIKALTQV
Links
Other
KH
family RBPs
Other
Arabidopsis lyrata
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002892746.1
Arabidopsis lyrata
fgenesh2_kg.1__1532__AT1G14170.3
N
0.816
AT1G14170
Arabidopsis thaliana
AT1G14170-TAIR-G
N
0.816