CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G61240
(
Brachypodium distachyon
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
BRADI1G61240
T18153_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G61240.1
KH
41
100
VYRYLCTSRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGCDERVITIFSSSRETNTIE
BRADI1G61240.1
KH
139
206
TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNERLPACGISGDELLQISGDPLVVRKALLQV
BRADI1G61240.1
KH
281
334
SLRLLCAASDVGGVIGKGGGIIKQIRQESGAFIKVDSSSAEDDCIITVSAKEFF
BRADI1G61240.1
KH
366
433
TTRLLVSTSQIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVASEDEEMVQISGDLEVARHALVQI
Links
Other
KH
family RBPs
Other
Brachypodium distachyon
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G61230
Brachypodium distachyon
BRADI1G61230
N
0.956
LOC_Os03g25970
Oryza sativa
LOC_Os03g25970
N
0.912
Sb01g034070
Sorghum bicolor
Sb01g034070
N
0.881
GRMZM2G126120
Zea mays
GRMZM2G126120
N
0.874
GRMZM2G084540
Zea mays
GRMZM2G084540
N
0.862
BGIOSIBCE011311
Oryza indica
BGIOSIBCE011311
N
0.821
PDK_20s1316613g001
Phoenix dactylifera
PDK_20s1316613g001
N
0.725
GSVIVG00019958001
Vitis vinifera
GSVIVG00019958001
N
0.715
GSVIVG00011439001
Vitis vinifera
GSVIVG00011439001
N
0.713