CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP4
(
Spermophilus tridecemlineatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSSTOG00000002573
T19516_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000002305
KH
11
45
PQSSARITISEGSCPERITTITGSTAAVFHAVSMI
ENSSTOP00000002305
KH
69
98
TLRLVIPASQCGSLIGKAGTKIKEIREVRE
ENSSTOP00000002305
KH
146
183
QTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQI
ENSSTOP00000002305
KH
260
322
SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI
Links
Other
KH
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP4
Tursiops truncatus
ENSTTRG00000001443
N
0.994
PCBP4
Pteropus vampyrus
ENSPVAG00000012474
N
0.994
PCBP4
Ochotona princeps
ENSOPRG00000008763
N
0.988
PCBP4
Homo sapiens
ENSG00000090097
I
0.988
Ame_R007066
Ailuropoda melanoleuca
Ame_R007066
N
0.976
PCBP4
Procavia capensis
ENSPCAG00000009515
N
0.976
PCBP4
Microcebus murinus
ENSMICG00000002686
N
0.976
PCBP4
Macropus eugenii
ENSMEUG00000006917
N
0.964
PCBP4
Echinops telfairi
ENSETEG00000001778
N
0.953
PCBP4
Monodelphis domestica
ENSMODG00000011790
I
0.952
PCBP4
Ornithorhynchus anatinus
ENSOANG00000014110
I
0.935