CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
yu
(
Drosophila melanogaster
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0029764
T19789_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0070760
KH
289
351
TYEFLFPISLIGHLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAMI
FBpp0070761
KH
311
373
TYEFLFPISLIGHLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAMI
FBpp0300894
KH
289
351
TYEFLFPISLIGHLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAMI
FBpp0300895
KH
289
351
TYEFLFPISLIGHLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAMI
Links
Other
KH
family RBPs
Other
Drosophila melanogaster
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD16260
Drosophila simulans
FBgn0187887
N
0.984
GM12645
Drosophila sechellia
FBgn0167581
N
0.937
GG18497
Drosophila erecta
FBgn0110710
N
0.937
GE16815
Drosophila yakuba
FBgn0234307
N
0.937
GK25472
Drosophila willistoni
FBgn0227431
N
0.921
GF20944
Drosophila ananassae
FBgn0097949
N
0.825
GJ14809
Drosophila virilis
FBgn0202013
N
0.781
GI11050
Drosophila mojavensis
FBgn0133813
N
0.766
GH24358
Drosophila grimshawi
FBgn0131814
N
0.750
GA28855-RA
Drosophila pseudoobscura
FBgn0250214
N
0.738
GL14640
Drosophila persimilis
FBgn0152244
N
0.738