CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TcIL3000.9.4830
(
Trypanosoma congolense
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
TcIL3000.9.4830
T20468_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TcIL3000.9.4830
KH
154
202
SRCIGRMSGSHGKTKYTIENVTRTRIVIADTHIWVMGTTQNIRVARDAL
Links
Other
KH
family RBPs
Other
Trypanosoma congolense
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tc00.1047053507011.50
Trypanosoma cruzi
Tc00.1047053507011.50
N
0.980
TvY486_0905560
Trypanosoma vivax
TvY486_0905560
N
0.959
Tbg972.9.7120
Trypanosoma brucei
Tbg972.9.7120
N
0.939
LinJ35_V3.3590
Leishmania infantum
LinJ35_V3.3590
N
0.898
LmjF35.3540
Leishmania major
LmjF35.3540
N
0.898
LbrM34_V2.3470
Leishmania braziliensis
LbrM34_V2.3470
N
0.898
LmxM34.3540
Leishmania mexicana
LmxM34.3540
N
0.878
Chlre2_kg.scaffold_20000177
Chlamydomonas reinhardtii
Chlre2_kg.scaffold_20000177
N
0.720
estExt_Genewise1Plus.C_600117
Volvox carteri
estExt_Genewise1Plus.C_600117
N
0.720
0700010277
Ostreococcus tauri
0700010277
N
0.700