Chlre2_kg.scaffold_20000177 (Chlamydomonas reinhardtii)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Chlre2_kg.scaffold_20000177 T20702_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Chlre2_kg.scaffold_20000177 KH 136 185

Links

Other KH family RBPs
Other Chlamydomonas reinhardtii RBPs

228 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 1.000
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.900
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.840
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.840
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.840
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.840
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.840
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.840
0700010277 Ostreococcus tauri 0700010277 N 0.840
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.840
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.840
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.820
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.820
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.820
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.820
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.820
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.820
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.820
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.820
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.820
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.820
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.820
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.820
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.820
28525.m000262 Ricinus communis 28525.m000262 N 0.820
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.800
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.800
pno1 Danio rerio ENSDARG00000008502 N 0.800
MDP0000120063 Malus x domestica MDP0000120063 N 0.800
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.800
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.800
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.800
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.800
PTTG_01898 Puccinia triticina PTTG_01898 N 0.800
MDP0000136407 Malus x domestica MDP0000136407 N 0.800
MDP0000754021 Malus x domestica MDP0000754021 N 0.800
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.800
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.800
pno1 Dictyostelium discoideum DDB_G0287557 N 0.800
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.800
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.800
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.800
PK08146.1 Cannabis sativa PK08146.1 N 0.800
ppa011086m Prunus persica ppa011086m N 0.800
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.800
MDP0000265633 Malus x domestica MDP0000265633 N 0.800
ppa009897m Prunus persica ppa009897m N 0.800
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.800
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.800
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.800
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.800
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.780
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.780
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.780
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.780
SB03G036840 Sorghum bicolor Sb03g036840 N 0.780
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.780
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.780
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.780
PNO1 Sus scrofa ENSSSCG00000008352 N 0.780
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.780
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.780
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.780
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.780
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.780
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.780
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.780
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.780
orf19.7618 Candida albicans orf19.7618 N 0.780
Pno1 Mus musculus ENSMUSG00000020116 N 0.780
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.780
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.780
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.780
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.780
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.780
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.780
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.780
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.780
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.780
CTRG_05813 Candida tropicalis CTRG_05813 N 0.780
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.780
PNO1 Procavia capensis ENSPCAG00000016146 N 0.780
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.780
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.780
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.780
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.780
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.780
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.780
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.780
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.780
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.780
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.780
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.780
PNO1 Homo sapiens ENSG00000115946 N 0.780
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.780
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.780
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.780
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.780
PNO1 Microcebus murinus ENSMICG00000010897 N 0.780
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.780
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.780
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.780
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.780
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.780
mgf006621m Mimulus guttatus mgf006621m N 0.780
LOC100061904 Equus caballus ENSECAG00000011263 N 0.780
PNO1 Canis familiaris ENSCAFG00000003256 N 0.780
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.780
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.780
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.780
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.780
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.780
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.780
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.780
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.780
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.780
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.780
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.780
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.780
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.780
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.780
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.760
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.760
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.760
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.760
PHUM356890 Pediculus humanus PHUM356890 N 0.760
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.760
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.760
PNO1 Ashbya gossypii PNO1 N 0.760
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.760
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.760
AAH42279 Xenopus laevis AAH42279 N 0.760
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.760
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.760
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.760
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.760
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.760
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.760
s_468317 Phytophthora sojae s_468317 N 0.760
Q8AVH4 Xenopus laevis Q8AVH4 N 0.760
AAQ24169 Xenopus laevis AAQ24169 N 0.760
PITG_01680 Phytophthora infestans PITG_01680 N 0.760
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.760
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.760
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.760
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.760
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.760
TvY486_0905560 Trypanosoma vivax TvY486_0905560 N 0.760
PNO1 Saccharomyces cerevisiae YOR145C N 0.760
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.760
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.760
GK20148 Drosophila willistoni FBgn0222145 N 0.745
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.745
mgf019585m Mimulus guttatus mgf019585m N 0.740
Tbg972.9.7120 Trypanosoma brucei Tbg972.9.7120 N 0.740
EDP42908.1 Malassezia globosa EDP42908.1 N 0.740
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.740
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.740
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.740
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.740
27316 Aureococcus anophagefferens 27316 N 0.740
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.740
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.740
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.740
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.740
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.740
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.740
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.740
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.740
CMU_025600 Cryptosporidium muris CMU_025600 N 0.725
GM23025 Drosophila sechellia FBgn0177893 N 0.725
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.725
GJ15820 Drosophila virilis FBgn0203007 N 0.725
GH12628 Drosophila grimshawi FBgn0120107 N 0.725
GD17488 Drosophila simulans FBgn0189040 N 0.725
GG19285 Drosophila erecta FBgn0111489 N 0.725
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.725
GE17874 Drosophila yakuba FBgn0068478 N 0.725
GF20246 Drosophila ananassae FBgn0097253 N 0.725
Tc00.1047053507011.50 Trypanosoma cruzi Tc00.1047053507011.50 N 0.720
TcIL3000.9.4830 Trypanosoma congolense TcIL3000.9.4830 N 0.720
LmjF35.3540 Leishmania major LmjF35.3540 N 0.720
PHATRDRAFT_9929 Phaeodactylum tricornutum Phatr9929 N 0.720
LbrM34_V2.3470 Leishmania braziliensis LbrM34_V2.3470 N 0.720
LinJ35_V3.3590 Leishmania infantum LinJ35_V3.3590 N 0.720
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.720
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.720
Bm1_42995 Brugia malayi Bm1_42995 N 0.720
CNBG_1323 Cryptococcus neoformans CNBG_1323 N 0.720
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.720
MCYG_07269 Microsporum canis MCYG_07269 N 0.720
LOAG_05624 Loa loa LOAG_05624 N 0.720
BDBG_01721 Blastomyces dermatitidis BDBG_01721 N 0.720
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.720
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.720
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.720
fgenesh_newKGs_pm.139__21 Emiliania huxleyi fgenesh_newKGs_pm.139__21 N 0.720
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.720
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.720
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.720
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.720
TERG_01665 Trichophyton rubrum TERG_01665 N 0.720
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.720
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.720
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.720
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.720
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.720
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.720
GI11042 Drosophila mojavensis FBgn0133805 N 0.706
NCLIV_012590 Neospora caninum NCLIV_012590 N 0.700
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 N 0.700
e_gw1.3.1059.1 Mycosphaerella fijiensis e_gw1.3.1059.1 N 0.700
fgenesh2_pm.11_#_145 Fragilariopsis cylindrus fgenesh2_pm.11_#_145 N 0.700
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.700
LmxM34.3540 Leishmania mexicana LmxM34.3540 N 0.700
UREG_07832 Uncinocarpus reesii UREG_07832 N 0.700
UM03495 Ustilago maydis UM03495 N 0.700
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.700
SOCG_04140 Schizosaccharomyces octosporus SOCG_04140 N 0.700
FGSG_01345 Fusarium graminearum FGSG_01345 N 0.700
FOXG_00036 Fusarium oxysporum FOXG_00036 N 0.700
FVEG_01480 Fusarium verticillioides FVEG_01480 N 0.700
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.700
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.700
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.700
PABG_01374 Paracoccidioides brasiliensis PABG_01374 N 0.700
THAPSDRAFT_35041 Thalassiosira pseudonana Thaps35041 N 0.700
EDO07242.1 Babesia bovis EDO07242.1 N 0.700