CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.16.184.1
(
Ostreococcus RCC809
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
e_gw1.16.184.1
T20747_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.16.184.1
KH
88
136
VRIDGNAGRVIGKGGEHVKYIETECSVRLEFRRDEGVVVVRPLASTESG
e_gw1.16.184.1
KH
201
257
EAEIPCPGKEGRVIGRGAATIREISARSGASCHVIKGSGVCVAKGKRKCVRMAYQMV
e_gw1.16.184.1
KH
324
382
VEIPCAGNEGRVVGKGGETIKFLRAQTGCMVDIKHQKTPAAVVVVSGTPANVEMCKAYV
Links
Other
KH
family RBPs
Other
Ostreococcus RCC809
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
1700010141
Ostreococcus tauri
1700010141
N
0.703