CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_1480047
(
Branchiostoma floridae
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_fgenesh2_pg.C_1480047
T20879_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_1480047
KH
112
174
TEEYRVPDKMVGLIIGRGGEQITRLQAESGCKVQMAQDSGGLPERVCTLTGTPPSIEHAKRLI
estExt_fgenesh2_pg.C_1480047
KH
200
264
VTEMMIPGNKVGLVIGKGGETIRSLQERAGVKMVMIQDGPYMNAPEKPLRITGDPQKTQRAKDLV
estExt_fgenesh2_pg.C_1480047
KH
310
372
GMDIPVPRFAVGIVIGKGGEMIKKIQNESGVRVQFKPDDGQNPNRVCQLIGAPDRCQAAAHTI
estExt_fgenesh2_pg.C_1480047
KH
412
477
TDEFPVPNNKCGLVIGKGGESIRTINQQSGAHVELMRNPPPHCEPGMKMFSIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Branchiostoma floridae
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH60400
Xenopus laevis
AAH60400
N
0.702
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.700
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.700
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.700
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.700
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.700
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.700
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.700
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.700
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.700
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.700
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.700
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.700
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.700
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.700
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.700
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.700
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.700
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.700
FUBP1
Homo sapiens
ENSG00000162613
I
0.700
FUBP1
Equus caballus
ENSECAG00000010867
I
0.700
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.700