Fubp1 (Dipodomys ordii)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDORG00000016534 T18689_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.770
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.770
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.770
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000015558 KH 100 162
ENSDORP00000015558 KH 185 249
ENSDORP00000015558 KH 275 337
ENSDORP00000015558 KH 376 441

Links

Other KH family RBPs
Other Dipodomys ordii RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 1.000
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 1.000
FUBP1 Procavia capensis ENSPCAG00000012617 I 1.000
FUBP1 Loxodonta africana ENSLAFG00000003273 I 1.000
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 1.000
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 1.000
FUBP1 Equus caballus ENSECAG00000010867 I 1.000
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 1.000
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 1.000
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 1.000
FUBP1 Vicugna pacos ENSVPAG00000004709 I 1.000
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 1.000
FUBP1 Canis familiaris ENSCAFG00000020361 I 1.000
FUBP1 Cavia porcellus ENSCPOG00000002757 I 1.000
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.996
FUBP1 Homo sapiens ENSG00000162613 I 0.996
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.996
Fubp1 Mus musculus ENSMUSG00000028034 I 0.996
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.996
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.996
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.996
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.996
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.992
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.992
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.988
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.988
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.984
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.973
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.942
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.927
AAH70981 Xenopus laevis AAH70981 I 0.926
AAI69815 Xenopus laevis AAI69815 I 0.926
AAH44277 Xenopus laevis AAH44277 I 0.918
AAN77161 Xenopus laevis AAN77161 I 0.899
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.891
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.865
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.864
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.864
fubp1 Danio rerio ENSDARG00000029248 I 0.852
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.844
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.825
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.798
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.798
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.798
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.798
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.795
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.795
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.795
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.795
FUBP3 Homo sapiens ENSG00000107164 N 0.795
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.795
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.791
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.791
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.791
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.791
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.791
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.791
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.787
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.787
FUBP3 Felis catus ENSFCAG00000005113 N 0.787
Fubp3 Mus musculus ENSMUSG00000026843 N 0.787
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.783
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.783
AAH60400 Xenopus laevis AAH60400 N 0.783
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.779
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.779
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.771
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.770
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.770
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.770
Khsrp Mus musculus ENSMUSG00000007670 I 0.770
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.770
KHSRP Felis catus ENSFCAG00000003731 I 0.770
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.770
LOC505564 Bos taurus ENSBTAG00000021018 I 0.770
KHSRP Canis familiaris ENSCAFG00000018667 I 0.770
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.770
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.770
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.770
KHSRP Homo sapiens ENSG00000088247 D 0.770
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.770
KHSRP Sus scrofa ENSSSCG00000013538 I 0.770
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.770
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.770
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.770
LOC100065608 Equus caballus ENSECAG00000018305 I 0.770
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.767
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.767
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.767
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.764
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.764
KHSRP Microcebus murinus ENSMICG00000007863 I 0.763
LOC100069755 Equus caballus ENSECAG00000011500 N 0.760
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.756
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.756
AAI61696 Xenopus laevis AAI61696 I 0.751
AAI69923 Xenopus laevis AAI69923 I 0.747
AAN77160 Xenopus laevis AAN77160 I 0.747
KHSRP Danio rerio ENSDARG00000026489 I 0.739
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.733
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.728
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.728
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.725
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.721
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.716
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.713
KHSRP Oryzias latipes ENSORLG00000011882 I 0.712
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.704
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.704
estExt_fgenesh2_pg.C_1480047 Branchiostoma floridae estExt_fgenesh2_pg.C_1480047 N 0.700