CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Fubp1
(
Dipodomys ordii
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSDORG00000016534
T18689_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.770
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.770
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.770
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.770
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000015558
KH
100
162
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSDORP00000015558
KH
185
249
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSDORP00000015558
KH
275
337
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEII
ENSDORP00000015558
KH
376
441
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Dipodomys ordii
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
1.000
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
1.000
FUBP1
Procavia capensis
ENSPCAG00000012617
I
1.000
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
1.000
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
1.000
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
1.000
FUBP1
Equus caballus
ENSECAG00000010867
I
1.000
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
1.000
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
1.000
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
1.000
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
1.000
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
1.000
FUBP1
Canis familiaris
ENSCAFG00000020361
I
1.000
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
1.000
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.996
FUBP1
Homo sapiens
ENSG00000162613
I
0.996
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.996
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.996
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.996
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.996
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.996
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.996
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.992
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.992
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.988
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.988
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.984
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.973
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.942
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.927
AAH70981
Xenopus laevis
AAH70981
I
0.926
AAI69815
Xenopus laevis
AAI69815
I
0.926
AAH44277
Xenopus laevis
AAH44277
I
0.918
AAN77161
Xenopus laevis
AAN77161
I
0.899
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.891
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.865
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.864
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.864
fubp1
Danio rerio
ENSDARG00000029248
I
0.852
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.844
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.825
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.798
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.798
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.798
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.798
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.795
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.795
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.795
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.795
FUBP3
Homo sapiens
ENSG00000107164
N
0.795
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.795
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.791
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.791
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.791
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.791
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.791
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.791
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.787
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.787
FUBP3
Felis catus
ENSFCAG00000005113
N
0.787
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.787
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.783
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.783
AAH60400
Xenopus laevis
AAH60400
N
0.783
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.779
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.779
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.771
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.770
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.770
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.770
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.770
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.770
KHSRP
Felis catus
ENSFCAG00000003731
I
0.770
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.770
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.770
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.770
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.770
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.770
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.770
KHSRP
Homo sapiens
ENSG00000088247
D
0.770
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.770
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.770
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.770
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.770
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.770
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.770
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.767
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.767
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.767
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.764
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.764
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.763
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.760
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.756
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.756
AAI61696
Xenopus laevis
AAI61696
I
0.751
AAI69923
Xenopus laevis
AAI69923
I
0.747
AAN77160
Xenopus laevis
AAN77160
I
0.747
KHSRP
Danio rerio
ENSDARG00000026489
I
0.739
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.733
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.728
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.728
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.725
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.721
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.716
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.713
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.712
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.704
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.704
estExt_fgenesh2_pg.C_1480047
Branchiostoma floridae
estExt_fgenesh2_pg.C_1480047
N
0.700