CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgeneshTA2_pg.C_scaffold_7000121
(
Trichoplax adhaerens
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
fgeneshTA2_pg.C_scaffold_7000121
T21161_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.707
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshTA2_pg.C_scaffold_7000121
KH
80
159
SERVLIPVKDYPGFNFIGKLLGPRGNTLKRLQSDTLTKMSILGKGSIRDKEKEEELRRDDPSSHLHLDLHVLIEVEAPYH
Links
Other
KH
family RBPs
Other
Trichoplax adhaerens
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.707
KHDRBS2
Oryzias latipes
ENSORLG00000010165
I
0.707
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.707
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.707
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.707
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.707
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.707
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.707
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.707
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.707
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.707
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.707
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.707
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.707
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.707
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.707
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.707
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.707
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.707
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.707
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.707
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.707
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.707
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.707
KHDRBS3
Tetraodon nigroviridis
ENSTNIG00000014021
I
0.702
KHDRBS3
Oryzias latipes
ENSORLG00000013441
I
0.702
KHDRBS3
Takifugu rubripes
ENSTRUG00000013451
I
0.702