KHDRBS3 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000013451 T19658_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHDRBS3
M033_0.6 		Homo sapiens AUAAAV RNAcompete
Ray et al.(2013)
RNCMPT00034 		0.940
KHDRBS2
M176_0.6 		Homo sapiens RAUAAAM RNAcompete
Ray et al.(2013)
RNCMPT00185 		0.810
Khdrbs1
M060_0.6 		Mus musculus UAAAAVV RNAcompete
Ray et al.(2013)
RNCMPT00062 		0.729
KHDRBS1
M160_0.6 		Homo sapiens AUAAAAV RNAcompete
Ray et al.(2013)
RNCMPT00169 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000034291 KH 29 111
ENSTRUP00000034292 KH 29 112
ENSTRUP00000034293 KH 29 111

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHDRBS3 Tetraodon nigroviridis ENSTNIG00000014021 I 1.000
KHDRBS3 Oryzias latipes ENSORLG00000013441 I 0.988
KHDRBS3 Gasterosteus aculeatus ENSGACG00000008847 I 0.988
Q6J4Q6_MACMU Macaca mulatta ENSMMUG00000022248 I 0.940
KHDRBS3 Loxodonta africana ENSLAFG00000004849 I 0.940
KHDRBS3 Meleagris gallopavo ENSMGAG00000012888 I 0.940
KHDRBS3 Cavia porcellus ENSCPOG00000000342 I 0.940
KHDRBS3 Echinops telfairi ENSETEG00000004701 I 0.940
KHDRBS3 Monodelphis domestica ENSMODG00000000975 I 0.940
KHDRBS3 Gallus gallus ENSGALG00000016203 I 0.940
KHDRBS3 Homo sapiens ENSG00000131773 D 0.940
KHDRBS3 Ornithorhynchus anatinus ENSOANG00000014074 I 0.940
KHDRBS3 Sus scrofa ENSSSCG00000005941 I 0.940
KHDRBS3 Spermophilus tridecemlineatus ENSSTOG00000008710 I 0.940
KHDRBS3 Tupaia belangeri ENSTBEG00000004773 I 0.940
KHDRBS3 Taeniopygia guttata ENSTGUG00000012611 I 0.940
Q6J4Q9_PANTR Pan troglodytes ENSPTRG00000020608 I 0.940
KHDRBS3 Ochotona princeps ENSOPRG00000000404 I 0.940
LOC100399263 Callithrix jacchus ENSCJAG00000004331 I 0.940
KHDRBS3 Oryctolagus cuniculus ENSOCUG00000000743 I 0.940
KHDRBS3 Otolemur garnettii ENSOGAG00000005150 I 0.940
Khdrbs3 Mus musculus ENSMUSG00000022332 I 0.940
Q6J4Q8_9PRIM Gorilla gorilla ENSGGOG00000000940 I 0.940
A4FV24_BOVIN Bos taurus ENSBTAG00000002181 I 0.940
KHDRBS3 Anolis carolinensis ENSACAG00000012042 I 0.940
Ame_R010681 Ailuropoda melanoleuca Ame_R010681 I 0.940
KHDRBS3 Tursiops truncatus ENSTTRG00000001270 I 0.940
KHDRBS3 Canis familiaris ENSCAFG00000001166 I 0.940
KHDRBS3 Pteropus vampyrus ENSPVAG00000017021 I 0.929
LOC100058116 Equus caballus ENSECAG00000010194 I 0.928
khdrbs3 Xenopus tropicalis ENSXETG00000009227 I 0.928
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.810
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.810
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.810
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.810
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.810
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.810
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.810
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.810
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.810
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.810
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.810
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.810
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.810
LOC100056966 Equus caballus ENSECAG00000021541 I 0.810
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.810
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.810
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.810
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.810
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.810
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.810
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.810
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.810
KHDRBS2 Homo sapiens ENSG00000112232 D 0.810
khdrbs2 Danio rerio ENSDARG00000069469 I 0.798
Khdrbs2 Dipodomys ordii ENSDORG00000005701 I 0.798
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.798
KHDRBS2 Takifugu rubripes ENSTRUG00000015760 I 0.798
KHDRBS3 Sorex araneus ENSSARG00000011751 I 0.795
Khdrbs3 Rattus norvegicus ENSRNOG00000009539 I 0.795
KHDRBS2 Gasterosteus aculeatus ENSGACG00000006097 I 0.786
KHDRBS2 Oryzias latipes ENSORLG00000010165 I 0.786
KHDRBS3 Tarsius syrichta ENSTSYG00000004106 I 0.771
KHDRBS2 Procavia capensis ENSPCAG00000001426 I 0.735
e_gw.41.46.1 Nematostella vectensis e_gw.41.46.1 I 0.733
KHDRBS1 Tursiops truncatus ENSTTRG00000009637 I 0.729
KHDRBS1 Pan troglodytes ENSPTRG00000000469 I 0.729
KHDRBS1 Pteropus vampyrus ENSPVAG00000013289 I 0.729
KHDRBS1 Tupaia belangeri ENSTBEG00000016857 I 0.729
KHDRBS1 Ochotona princeps ENSOPRG00000005131 I 0.729
KHDRBS1 Tarsius syrichta ENSTSYG00000004921 I 0.729
KHDRBS1 Spermophilus tridecemlineatus ENSSTOG00000014138 I 0.729
ENSPPYG00000001605 Pongo pygmaeus ENSPPYG00000001605 I 0.729
KHDRBS1 Procavia capensis ENSPCAG00000009844 I 0.729
KHDRBS1 Macaca mulatta ENSMMUG00000023438 I 0.729
KHDRBS1 Homo sapiens ENSG00000121774 D 0.729
Q29RQ2_BOVIN Bos taurus ENSBTAG00000012497 I 0.729
KHDR1_CHICK Gallus gallus ENSGALG00000003272 I 0.729
KHDRBS1 Gorilla gorilla ENSGGOG00000008633 I 0.729
KHDRBS1 Felis catus ENSFCAG00000006511 I 0.729
KHDRBS1 Equus caballus ENSECAG00000019346 I 0.729
ENSCHOG00000006973 Choloepus hoffmanni ENSCHOG00000006973 I 0.729
LOC100414412 Callithrix jacchus ENSCJAG00000006580 I 0.729
KHDRBS1 Cavia porcellus ENSCPOG00000024148 I 0.729
KHDRBS1 Vicugna pacos ENSVPAG00000006966 I 0.729
KHDRBS1 Loxodonta africana ENSLAFG00000009414 I 0.729
XM_001365874.1 Monodelphis domestica ENSMODG00000017551 I 0.729
Khdrbs1 Mus musculus ENSMUSG00000028790 D 0.729
KHDRBS1 Ornithorhynchus anatinus ENSOANG00000012357 I 0.729
KHDRBS1 Oryctolagus cuniculus ENSOCUG00000007654 I 0.729
KHDRBS1 Meleagris gallopavo ENSMGAG00000004455 I 0.729
Ame_R010128 Ailuropoda melanoleuca Ame_R010128 I 0.729
KHDRBS1 Canis familiaris ENSCAFG00000010777 I 0.729
KHDRBS1 Anolis carolinensis ENSACAG00000011693 I 0.718
KHDRBS1 Taeniopygia guttata ENSTGUG00000017346 I 0.714
Ame_R015982 Ailuropoda melanoleuca Ame_R015982 I 0.711
KHDRBS2 Myotis lucifugus ENSMLUG00000005484 I 0.711
KHDRBS1 Sorex araneus ENSSARG00000008479 I 0.702
fgeneshTA2_pg.C_scaffold_7000121 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_7000121 I 0.702