CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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bicc2
(
Danio rerio
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSDARG00000076557
T22482_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000029283
KH
82
126
EKVMRETNTQVKWPSKLKIGAKSKKDPHVKVEGKRANVLEAKRKI
ENSDARP00000029283
KH
138
204
TLKMDVTHTEHSHVIGKGGGNIKKVMEETSCHIHFPDSNRSNSSGEKSNQVSIAGPVEGVESARKQI
ENSDARP00000029283
KH
291
353
STQLDVTSQQHLFLLGQNGANFLTVMHQTHTQIILPDLSSPQHTPSLLIQGTADGVCLARQQL
ENSDARP00000029283
SAM
747
810
SPAHADDLIELLAQLGLEKYIDIFQQQEIDYQTFLTLSDEDLKEVGVSTFGARRKMLLAIADLS
Links
Other
KH,SAM
family RBPs
Other
Danio rerio
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
bicc2
Danio rerio
ENSDARG00000075157
N
0.988
ENSTNIG00000014205
Tetraodon nigroviridis
ENSTNIG00000014205
N
0.833
ENSGACG00000017939
Gasterosteus aculeatus
ENSGACG00000017939
N
0.824
ENSORLG00000004346
Oryzias latipes
ENSORLG00000004346
N
0.820