CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSGACG00000017939
(
Gasterosteus aculeatus
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSGACG00000017939
T22491_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000023696
KH
86
130
ERVMRETDTQVRWPSKLKIGAKSKKDPHVKVEGKQDNVLNAKKKI
ENSGACP00000023696
KH
142
208
TLKMDVAYTEHSHVIGKGGGNIKKVMEVTSCHIHFPDSNRHNGTGEKSNQVSIAGPIEGVEEARRRI
ENSGACP00000023696
KH
302
364
SSQMDVTSQQHLFLLGQNGAHFLSVMHQTQTQIILPDLSAPQSPPSLLIQGSPEGVCLARQQM
ENSGACP00000023696
SAM
723
785
PQMMDDLPELLGQLGLIKYIDVFEQQEIDYQTFLTLSDEDLKEVGISTFGARRKMLLAISDLN
Links
Other
KH,SAM
family RBPs
Other
Gasterosteus aculeatus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSTNIG00000014205
Tetraodon nigroviridis
ENSTNIG00000014205
N
0.895
ENSORLG00000004346
Oryzias latipes
ENSORLG00000004346
N
0.870
bicc2
Danio rerio
ENSDARG00000076557
N
0.824
bicc2
Danio rerio
ENSDARG00000075157
N
0.817