CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UREG_03619
(
Uncinocarpus reesii
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
UREG_03619
T23277_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
URET_03619
La
126
184
IRKQVEFYFSDSNLPMDKFLLSKVGGSENRPVELSLLHSFKRMRRFQPFSAIVEALKTS
URET_03619
RRM
236
291
EPSTQFDIEAFFAPYGPTNAVRLRRTNEKIFKGSVFVEFDSEDTQKKFLALEPKPK
Links
Other
La,RRM
family RBPs
Other
Uncinocarpus reesii
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CIMG_06864
Coccidioides immitis
CIMG_06864
N
0.939
CPSG_09523
Coccidioides posadasii
CPSG_09523
N
0.939
PABG_00372
Paracoccidioides brasiliensis
PABG_00372
N
0.897
HCAG_00786
Histoplasma capsulatum
HCAG_00786
N
0.891
MCYG_01238
Microsporum canis
MCYG_01238
N
0.887
TESG_01444
Trichophyton tonsurans
TESG_01444
N
0.879
BDBG_00954
Blastomyces dermatitidis
BDBG_00954
N
0.879
TEQG_02174
Trichophyton equinum
TEQG_02174
N
0.879
ARB_01641
Arthroderma benhamiae
ARB_01641
N
0.879
MGYG_01788
Microsporum gypseum
MGYG_01788
N
0.866
TERG_07656
Trichophyton rubrum
TERG_07656
N
0.866
TRV_05156
Trichophyton verrucosum
TRV_05156
N
0.853
ATEG_00450
Aspergillus terreus
CADATEAG00009019
N
0.810
ACLA_022870
Aspergillus clavatus
CADACLAG00002218
N
0.802
fgenesh1_pg.00083_#_507
Aspergillus carbonarius
fgenesh1_pg.00083_#_507
N
0.795
NFIA_012960
Neosartorya fischeri
CADNFIAG00001025
N
0.793
AFUA_1G12590
Aspergillus fumigatus
CADAFUAG00007294
N
0.793
AFLA_066270
Aspergillus flavus
CADAFLAG00008051
N
0.790
AO090001000218
Aspergillus oryzae
CADAORAG00000197
N
0.790
ANIA_01045
Aspergillus nidulans
CADANIAG00001597
N
0.785
Pc13g13010
Penicillium chrysogenum
Pc13g13010
N
0.778
An08g05260
Aspergillus niger
CADANGAG00006847
N
0.769
PMAA_068330
Penicillium marneffei
PMAA_068330
N
0.750