CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ17394
(
Drosophila virilis
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
FBgn0204566
T23471_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0231811
La
56
115
IIRQVEYYFGDANLHRDKFLSEQISKNEGGWVPLSVLVTFKRLASLTTDFDEIVNALNKS
FBpp0231811
RRM
153
226
VYAKGFPLDSQMTEILDFVSAYEKVVNVTMRKHYDKPTKSYKFKGSIFVTFEKKEQAKEFFDKEKIVYKERELL
FBpp0231811
RRM
271
332
EGAPDTVTREEIREAFEKVKDFDIAYIEFNKGDTKGSVRLTEADAAEKYIAKVDDAKLKFND
Links
Other
La,RRM
family RBPs
Other
Drosophila virilis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH13748
Drosophila grimshawi
FBgn0121224
N
0.954
GI17890
Drosophila mojavensis
FBgn0140631
N
0.929
GG21576
Drosophila erecta
FBgn0113754
N
0.827
GE12598
Drosophila yakuba
FBgn0230329
N
0.816
GL26419
Drosophila persimilis
FBgn0164001
N
0.815
La
Drosophila melanogaster
FBgn0011638
N
0.811
GA10645-RA
Drosophila pseudoobscura
FBgn0070701
N
0.809
GF15376
Drosophila ananassae
FBgn0092401
N
0.808