CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE12598
(
Drosophila yakuba
)
La,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
PF00076 (RRM_1)
IPR006630
IPR000504
FBgn0230329
T23475_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0257608
La
54
113
IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLTEIVAALNKS
FBpp0257608
RRM
152
223
YAKGFPLDSQMSELLDFAANYEKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKAQAKAFLEEEKIAYKEREL
FBpp0257608
RRM
269
330
EGAPETSSREEIREAFEKIKDFEVAYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKFNE
Links
Other
La,RRM
family RBPs
Other
Drosophila yakuba
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG21576
Drosophila erecta
FBgn0113754
N
0.964
La
Drosophila melanogaster
FBgn0011638
N
0.954
GA10645-RA
Drosophila pseudoobscura
FBgn0070701
N
0.854
GL26419
Drosophila persimilis
FBgn0164001
N
0.849
GF15376
Drosophila ananassae
FBgn0092401
N
0.838
GI17890
Drosophila mojavensis
FBgn0140631
N
0.831
GJ17394
Drosophila virilis
FBgn0204566
N
0.816
GH13748
Drosophila grimshawi
FBgn0121224
N
0.815