CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LinJ33_V3.1210
(
Leishmania infantum
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
LinJ33_V3.1210
T24575_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LinJ33_V3.1210
PUF
406
437
DLKGYAVEFAKDQEGSRFIQSAVDTASPESLD
LinJ33_V3.1210
PUF
442
474
EIFESPLELVTDIFGNYVLQKLLDKGNTPQLTF
LinJ33_V3.1210
PUF
479
505
MCGHVVELTMQTYGCRVIQKCIEVMPS
LinJ33_V3.1210
PUF
514
547
ELKDNVAKCIQDQNGNHVIQKCVEVIPQRCGFII
LinJ33_V3.1210
PUF
549
582
AFSGRVMELATHAYGCRVIQCIMQHCPEQEDTIF
LinJ33_V3.1210
PUF
584
619
ELLKAVDVLAKDQYGNYVIQHVLQNVKDESKIESVY
LinJ33_V3.1210
PUF
621
655
ALKPKFFYLSKQKFASNVMEKLYARSSPANRMEIV
LinJ33_V3.1210
PUF
735
760
LCLMMSDQYANYVVQRVLDASEVDQF
Links
Other
PUF
family RBPs
Other
Leishmania infantum
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LmjF33.1150
Leishmania major
LmjF33.1150
N
0.996
LmxM32.1150
Leishmania mexicana
LmxM32.1150
N
0.984
LbrM33_V2.1360
Leishmania braziliensis
LbrM33_V2.1360
N
0.950