CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A8E651_BOVIN
(
Bos taurus
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
ENSBTAG00000017755
T25514_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000023612
RRM
364
442
IYVQGLNDSVTLDDLVDFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPATAKAAVEWFDGKDFQGSKLK
ENSBTAP00000023612
RanBP ZF
519
550
RAGDWQCPNPGCGNQNFAWRTECNQCKAPKPE
Links
Other
RanBP ZF,RRM
family RBPs
Other
Bos taurus
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000011684
Pongo pygmaeus
ENSPPYG00000011684
N
0.982
EWSR1
Loxodonta africana
ENSLAFG00000015757
N
0.982
EWSR1
Gorilla gorilla
ENSGGOG00000012212
N
0.982
EWSR1
Homo sapiens
ENSG00000182944
N
0.982
EWSR1
Pan troglodytes
ENSPTRG00000014218
N
0.982
EWSR1
Sus scrofa
ENSSSCG00000009974
N
0.973
Ewsr1
Rattus norvegicus
ENSRNOG00000009437
N
0.973
EWSR1
Macaca mulatta
ENSMMUG00000021374
N
0.973
EWSR1
Procavia capensis
ENSPCAG00000010966
N
0.973
EWSR1
Pteropus vampyrus
ENSPVAG00000009815
N
0.973
Ewsr1
Mus musculus
ENSMUSG00000009079
N
0.973
LOC607046
Canis familiaris
ENSCAFG00000012160
N
0.973
ENSCJAG00000019987
Callithrix jacchus
ENSCJAG00000019987
N
0.973
EWSR1
Erinaceus europaeus
ENSEEUG00000012884
N
0.964
Q6X9Y1_HORSE
Equus caballus
ENSECAG00000022120
N
0.956
ENSOCUG00000004432
Oryctolagus cuniculus
ENSOCUG00000004432
N
0.955
ENSOCUG00000027270
Oryctolagus cuniculus
ENSOCUG00000027270
N
0.955
Ame_R003420
Ailuropoda melanoleuca
Ame_R003420
N
0.955
ENSOCUG00000023130
Oryctolagus cuniculus
ENSOCUG00000023130
N
0.955
EWSR1
Tursiops truncatus
ENSTTRG00000011881
N
0.955
EWSR1
Echinops telfairi
ENSETEG00000003856
N
0.946
ENSCJAG00000013644
Callithrix jacchus
ENSCJAG00000013644
N
0.946
XM_001364468.1
Monodelphis domestica
ENSMODG00000008679
N
0.937
ENSMEUG00000013663
Macropus eugenii
ENSMEUG00000013663
N
0.937
ENSMEUG00000008703
Macropus eugenii
ENSMEUG00000008703
N
0.937
ENSCAFG00000018550
Canis familiaris
ENSCAFG00000018550
N
0.937
XM_001372950.1
Monodelphis domestica
ENSMODG00000010492
N
0.928
ENSPPYG00000000560
Pongo pygmaeus
ENSPPYG00000000560
N
0.919
ENSPTRG00000034346
Pan troglodytes
ENSPTRG00000034346
N
0.919
EWSR1
Felis catus
ENSFCAG00000004243
N
0.919
EWSR1
Meleagris gallopavo
ENSMGAG00000005282
N
0.919
EWSR1
Ornithorhynchus anatinus
ENSOANG00000001304
N
0.901
EWSR1
Anolis carolinensis
ENSACAG00000009298
N
0.892
ENSCAFG00000007811
Canis familiaris
ENSCAFG00000007811
N
0.883
EWSR1
Microcebus murinus
ENSMICG00000004264
N
0.865
Q5ZML8_CHICK
Gallus gallus
ENSGALG00000008149
N
0.829
ENSCHOG00000009549
Choloepus hoffmanni
ENSCHOG00000009549
N
0.821
EWSR1
Taeniopygia guttata
ENSTGUG00000010419
N
0.811
AAI08750
Xenopus laevis
AAI08750
N
0.775
AAH97641
Xenopus laevis
AAH97641
N
0.775
AAI08816
Xenopus laevis
AAI08816
N
0.766
ewsr1
Xenopus tropicalis
ENSXETG00000024796
N
0.748
ewsr1a
Danio rerio
ENSDARG00000020258
N
0.739
EWSR1
Macropus eugenii
ENSMEUG00000002729
N
0.726
EWSR1
Oryzias latipes
ENSORLG00000006712
N
0.703