CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH12560
(
Drosophila grimshawi
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0120039
T25702_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0146466
RRM
125
203
IFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKDTGASKGEATVTYDDVNAAQSAIQWFDGNDFNGSNIK
FBpp0146466
RanBP ZF
293
322
RDGDWKCSSCNNTNFAWRNECNRCKTPKGD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila grimshawi
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI11213
Drosophila mojavensis
FBgn0133974
N
0.963
caz
Drosophila melanogaster
FBgn0011571
N
0.936
GM13418
Drosophila sechellia
FBgn0168349
N
0.936
GG17948
Drosophila erecta
FBgn0110168
N
0.917
GF19034
Drosophila ananassae
FBgn0096046
N
0.917
GK25719
Drosophila willistoni
FBgn0227678
N
0.899
GL21338
Drosophila persimilis
FBgn0158931
N
0.890
GD17272
Drosophila simulans
FBgn0188834
N
0.890
GA22827-RA
Drosophila pseudoobscura
FBgn0244229
N
0.890