CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM13418
(
Drosophila sechellia
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0168349
T25711_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0194895
RRM
119
197
IFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIK
FBpp0194895
RanBP ZF
278
307
RDGDWKCNSCNNTNFAWRNECNRCKTPKGD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila sechellia
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
caz
Drosophila melanogaster
FBgn0011571
N
1.000
GG17948
Drosophila erecta
FBgn0110168
N
0.982
GF19034
Drosophila ananassae
FBgn0096046
N
0.963
GD17272
Drosophila simulans
FBgn0188834
N
0.954
GK25719
Drosophila willistoni
FBgn0227678
N
0.945
GI11213
Drosophila mojavensis
FBgn0133974
N
0.936
GH12560
Drosophila grimshawi
FBgn0120039
N
0.936
GL21338
Drosophila persimilis
FBgn0158931
N
0.908
GA22827-RA
Drosophila pseudoobscura
FBgn0244229
N
0.908
AGAP001645
Anopheles gambiae
AGAP001645
N
0.706