CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_452871
(
Phytophthora sojae
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
s_452871
T25839_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_452871
RanBP ZF
28
55
EKNWVCADCSHENYARRKRCFRCRAPKV
s_452871
RRM
264
335
LYVGGLKSASGREAVKEQEDALYKQFGEWGEVENINVIHRKSICFVRYRHRTSAEFAKEAMTNQALQSDEVL
Links
Other
RanBP ZF,RRM
family RBPs
Other
Phytophthora sojae
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PITG_02067
Phytophthora infestans
PITG_02067
N
0.920
PITG_00088
Phytophthora infestans
PITG_00088
N
0.910