CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE11855
(
Drosophila yakuba
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
FBgn0229641
T27005_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0256865
RanBP ZF
20
49
SPGDWICPDYDCRHLNFARRLQCNKCDRDR
FBpp0256865
RanBP ZF
102
131
SAEDWQCSKCANVNWARRQTCNMCNAPKFS
Links
Other
RanBP ZF
family RBPs
Other
Drosophila yakuba
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG21779
Drosophila erecta
FBgn0113957
N
1.000
GD25119
Drosophila simulans
FBgn0196431
N
1.000
CG3732
Drosophila melanogaster
FBgn0034750
N
1.000
GF13007
Drosophila ananassae
FBgn0090040
N
0.950
GJ21255
Drosophila virilis
FBgn0208388
N
0.871
GI20006
Drosophila mojavensis
FBgn0142742
N
0.871
GH20335
Drosophila grimshawi
FBgn0127799
N
0.871
GA17648-RA
Drosophila pseudoobscura
FBgn0077659
N
0.867
GL10466
Drosophila persimilis
FBgn0148076
N
0.867
GK17903
Drosophila willistoni
FBgn0219902
N
0.833
XP_002165332.1
Hydra magnipapillata
XP_002165332.1
N
0.721
amel4_ncbi_hmm3854
Apis mellifera
amel4_ncbi_hmm3854
N
0.721
amel4_ncbi_hmm3854
Tribolium castaneum
amel4_ncbi_hmm3854
N
0.721
AAEL011285
Aedes aegypti
AAEL011285
N
0.710