CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_002165332.1
(
Hydra magnipapillata
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
XP_002165332.1
T27909_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002165332.1
RanBP ZF
8
38
SEGDWICDDNDCQNVNFARRLKCNKCGKDKP
XP_002165332.1
RanBP ZF
66
95
SADDWQCSKCGNVNWARRSTCNVCNAPKVG
Links
Other
RanBP ZF
family RBPs
Other
Hydra magnipapillata
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.1.429.1
Lottia gigantea
gw1.1.429.1
N
0.758
amel4_ncbi_hmm3854
Apis mellifera
amel4_ncbi_hmm3854
N
0.754
amel4_ncbi_hmm3854
Tribolium castaneum
amel4_ncbi_hmm3854
N
0.754
e_gw1.17.447.1
Daphnia pulex
e_gw1.17.447.1
N
0.726
gw.348.48.1
Branchiostoma floridae
gw.348.48.1
I
0.721
GE11855
Drosophila yakuba
FBgn0229641
N
0.721
CG3732
Drosophila melanogaster
FBgn0034750
N
0.721
GG21779
Drosophila erecta
FBgn0113957
N
0.721
GD25119
Drosophila simulans
FBgn0196431
N
0.721
PHUM217580
Pediculus humanus
PHUM217580
N
0.710
BGIBMGA007567
Bombyx mori
BGIBMGA007567
N
0.705
125254
Helobdella robusta
125254
I
0.705