CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr6g083530
(
Medicago truncatula
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
Medtr6g083530
T27674_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr6g083530.1
RanBP ZF
307
336
KKGDWVCQKCNFMNFSRNRKCLNCEEDGPK
Medtr6g083530.1
RanBP ZF
346
375
KEGDWICTECNFMNFSRNITCLECKTEGPK
Medtr6g083530.1
RanBP ZF
388
417
KKGDWTCPQCGFMNFASNVKCFKCPEPRPK
Medtr6g083530.1
RanBP ZF
420
448
PGDWSCPKCDFMNFASKDKCFRCQESNPN
Medtr6g083530.1
RanBP ZF
465
492
PGDWSCPKCDFYNYARNTTCLKCNAKPS
Links
Other
RanBP ZF
family RBPs
Other
Medicago truncatula
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma07g11510.1
Glycine max
Glyma07g11510.1
N
0.743
Glyma09g30770.1
Glycine max
Glyma09g30770.1
N
0.703