CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CHGG_06434
(
Chaetomium globosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CHGG_06434
T28613_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CHGT_06434
RRM
110
177
LMISELNWWNTDDDIRGWVHQVGCENELKDITFSEHKINGKSKGQAYVEFTSQQAATATKHHVDSLTN
Links
Other
RRM
family RBPs
Other
Chaetomium globosum
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.1_#_1066
Myceliophthora thermophila
fgenesh1_pg.1_#_1066
N
0.853
fgenesh3_pm.C_scaffold_2000208
Neurospora discreta
fgenesh3_pm.C_scaffold_2000208
N
0.812
estExt_fgenesh2_pm.C_11699
Thielavia terrestris
estExt_fgenesh2_pm.C_11699
N
0.809
estExt_fgenesh1_pg.C_70148
Neurospora tetrasperma
estExt_fgenesh1_pg.C_70148
N
0.794
NCU02152
Neurospora crassa
NCU02152
N
0.779
Pa_1_17560
Podospora anserina
Pa_1_17560
N
0.750
GLRG_04675
Colletotrichum graminicola
GLRG_04675
N
0.714
CPSG_05134
Coccidioides posadasii
CPSG_05134
N
0.710
ANIA_04799
Aspergillus nidulans
CADANIAG00005622
N
0.708