CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GLRG_04675
(
Colletotrichum graminicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GLRG_04675
T29415_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_04675T0
RRM
88
157
LMISDLNWWNTDDDIRGYARAAHCEDELKDITFSEHKVNGKSKGQAYVEFTTQQAATAAKHALEATDGGQ
Links
Other
RRM
family RBPs
Other
Colletotrichum graminicola
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.1_#_1066
Myceliophthora thermophila
fgenesh1_pg.1_#_1066
N
0.771
AFUA_3G06890
Aspergillus fumigatus
CADAFUAG00005682
N
0.732
NFIA_070360
Neosartorya fischeri
CADNFIAG00005684
N
0.732
Pa_1_17560
Podospora anserina
Pa_1_17560
N
0.729
fgenesh3_pm.C_scaffold_2000208
Neurospora discreta
fgenesh3_pm.C_scaffold_2000208
N
0.729
estExt_fgenesh2_pm.C_11699
Thielavia terrestris
estExt_fgenesh2_pm.C_11699
N
0.729
estExt_fgenesh1_pg.C_70148
Neurospora tetrasperma
estExt_fgenesh1_pg.C_70148
N
0.729
CHGG_06434
Chaetomium globosum
CHGG_06434
N
0.714
NCU02152
Neurospora crassa
NCU02152
N
0.714
CPSG_05134
Coccidioides posadasii
CPSG_05134
N
0.700
PMAA_002860
Penicillium marneffei
PMAA_002860
N
0.700
CIMG_00383
Coccidioides immitis
CIMG_00383
N
0.700