CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CLUG_03443
(
Candida lusitaniae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CLUG_03443
T28727_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CLUT_03443
RRM
183
253
LFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEKALNELQGKEIDGRPVN
CLUT_03443
RRM
284
354
LFIGNLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCR
Links
Other
RRM
family RBPs
Other
Candida lusitaniae
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DEHA0A13563g
Debaryomyces hansenii
DEHA0A13563g
N
0.817
CPAG_01336
Candida parapsilosis
CPAG_01336
N
0.796
LELG_01457
Lodderomyces elongisporus
LELG_01457
N
0.796
orf19.6090
Candida albicans
orf19.6090
N
0.789
Cd36_00170
Candida dubliniensis
Cd36_00170
N
0.789
e_gwh1.1.1.1022.1
Pichia stipitis
e_gwh1.1.1.1022.1
N
0.782
CTRG_04290
Candida tropicalis
CTRG_04290
N
0.775
XP_002493590.1
Pichia pastoris
XP_002493590.1
N
0.718