CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CNBG_4502
(
Cryptococcus neoformans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CNBG_4502
T28787_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CNBG_4502T0
RRM
36
112
LYIGNLSFYTTETQMYQLFSTCAKPEIGGGIKRIIMGLDRNTKTPCGFAFVEYFLHEEAVDCMRYISGTKLDERVIR
Links
Other
RRM
family RBPs
Other
Cryptococcus neoformans
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_20437
Schizophyllum commune
estExt_fgenesh1_pm.C_20437
N
0.792
gwh2.1.1054.1
Phanerochaete chrysosporium
gwh2.1.1054.1
N
0.779
estExt_fgenesh2_kg.C_120041
Serpula lacrymans
estExt_fgenesh2_kg.C_120041
N
0.779
estExt_Genewise1_worm.C_60324
Laccaria bicolor
estExt_Genewise1_worm.C_60324
N
0.779
gw1.1.2136.1
Pleurotus ostreatus
gw1.1.2136.1
N
0.766
estExt_fgenesh2_kg.C_20664
Agaricus bisporus
estExt_fgenesh2_kg.C_20664
N
0.753
e_gw1.121.83.1
Postia placenta
e_gw1.121.83.1
N
0.753
UM04861
Ustilago maydis
UM04861
N
0.740
e_gw1.17.191.1
Trichoderma reesei
e_gw1.17.191.1
N
0.701