CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ009773
(
Culex pipiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CpipJ_CPIJ009773
T28949_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ009773-RA
RRM
73
116
GGVALCLSPQGRRNGEALVRFVSQEHRDMALKRHKHHISNRYIE
CpipJ_CPIJ009773-RA
RRM
148
223
IRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQESDASKALSKHRESIGQRYIE
CpipJ_CPIJ009773-RA
RRM
278
350
IRLRGLPYEAKVEHILHFLEDFAKHIVYQGVHLVYNAQGQFNGEAFIQMDSEVAAYQSAQQKHHKNMMFGKKQ
Links
Other
RRM
family RBPs
Other
Culex pipiens
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ009773
Culex quinquefasciatus
CPIJ009773
N
1.000
AAEL011420
Aedes aegypti
AAEL011420
N
0.840
AGAP011722
Anopheles gambiae
AGAP011722
N
0.836
GL11864
Drosophila persimilis
FBgn0149472
N
0.714
GJ21539
Drosophila virilis
FBgn0208659
N
0.714
GA20896-RA
Drosophila pseudoobscura
FBgn0080886
N
0.714
GI18454
Drosophila mojavensis
FBgn0141193
N
0.714
GK17961
Drosophila willistoni
FBgn0219960
N
0.709
GH22967
Drosophila grimshawi
FBgn0130424
N
0.709