CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH22967
(
Drosophila grimshawi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0130424
T43545_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0156873
RRM
281
350
VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKRHKHHIGSRYIE
FBpp0156873
RRM
382
457
IRMRGLPYDCTPKQVLEFFTTGESPCHVLDGNEGVLFVKKPDGRATGDAFVLFANECDSSKALGRHRESIGQRYIE
FBpp0156873
RRM
546
619
IRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDLEESARLCAQRKHNQFMVFGKKFR
Links
Other
RRM
family RBPs
Other
Drosophila grimshawi
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI18454
Drosophila mojavensis
FBgn0141193
N
0.977
GJ21539
Drosophila virilis
FBgn0208659
N
0.977
GA20896-RA
Drosophila pseudoobscura
FBgn0080886
N
0.959
GL11864
Drosophila persimilis
FBgn0149472
N
0.955
GK17961
Drosophila willistoni
FBgn0219960
N
0.941
AGAP011722
Anopheles gambiae
AGAP011722
N
0.823
AAEL011420
Aedes aegypti
AAEL011420
N
0.809
BGIBMGA004353
Bombyx mori
BGIBMGA004353
N
0.809
PHUM433160
Pediculus humanus
PHUM433160
N
0.769
nasonia_NCBI_hmm386924
Nasonia vitripennis
nasonia_NCBI_hmm386924
N
0.768
estExt_Genewise1Plus.C_1030025
Daphnia pulex
estExt_Genewise1Plus.C_1030025
N
0.766
DGIL_AUG5s15238g5t4
Acyrtosiphon pisum
DGIL_AUG5s15238g5t4
N
0.745
CpipJ_CPIJ009773
Culex pipiens
CpipJ_CPIJ009773
N
0.709
CPIJ009773
Culex quinquefasciatus
CPIJ009773
N
0.709