CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CTRG_01565
(
Candida tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CTRG_01565
T29108_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CTRT_01565
RRM
175
226
VFVGNVPSEIINSKAIERSFKKLFKHYGKIESIRYRSISFDENLPRKVAFAK
CTRT_01565
RRM
225
265
AKKNLHKSRDSVNAYIVYKEKPASLAAKELNATVFEDHHLR
CTRT_01565
RRM
281
351
IFVGNLDFEEKEESLWKYFNSKLDNDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALLLNDKPLEVEGN
Links
Other
RRM
family RBPs
Other
Candida tropicalis
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cd36_18760
Candida dubliniensis
Cd36_18760
N
0.873
orf19.809
Candida albicans
orf19.809
N
0.864
CPAG_03144
Candida parapsilosis
CPAG_03144
N
0.757
DEHA0C17402g
Debaryomyces hansenii
DEHA0C17402g
N
0.709