CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LELG_01021
(
Lodderomyces elongisporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LELG_01021
T29515_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LELT_01021
RRM
175
226
VFVGNVPNQVITSKSVAKSFKRLFKEHGKIDSIRFRSIAFSDQLPKKVSYVK
LELT_01021
RRM
213
266
AFSDQLPKKVSYVKKNLHESRDSVNAYVVFVEPKDSLKAAKALNATVFEDHHLR
LELT_01021
RRM
282
351
IFVGNLDFEEKEENLWKFFNEKLDGDVESVRIVRDSVTNMGKGFALVQFKDSLSVNKALLLNDKPMNTTS
Links
Other
RRM
family RBPs
Other
Lodderomyces elongisporus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_03144
Candida parapsilosis
CPAG_03144
N
0.716
orf19.809
Candida albicans
orf19.809
N
0.712