CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPAG_03144
(
Candida parapsilosis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPAG_03144
T28839_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPAG_03144.1
RRM
235
286
AFVGNVPSDVITSKTVAKNFKKLFKQFGKIDSIRFRSISFDENLPRKVSFAK
CPAG_03144.1
RRM
280
325
RKVSFAKKSLHNSRDSVNAYVVFVEKSSSLAAKKLNAIVFENHHLR
CPAG_03144.1
RRM
341
408
IFVGNLDFEEKEESLWNYFNNKLDNDVESVRIIRDSKTNMGKGFALVQFNDTLTVNRALMLNDKPMDV
Links
Other
RRM
family RBPs
Other
Candida parapsilosis
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
orf19.809
Candida albicans
orf19.809
N
0.781
Cd36_18760
Candida dubliniensis
Cd36_18760
N
0.759
CTRG_01565
Candida tropicalis
CTRG_01565
N
0.757
LELG_01021
Lodderomyces elongisporus
LELG_01021
N
0.716