CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOAG_10295
(
Loa loa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LOAG_10295
T29648_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOAG_10295T0
RRM
8
70
VYVGRLSYRASERDIEHFFRGYGRIRDIVLKNGFGFVEFDDPRDADDAVYELNGKELCGERVI
LOAG_10295T0
RRM
200
257
QQDEMDLKDIMRTAGEVTFADAHKQHPNEGIVCFLTRDDLERALDKLQGKEVNGRKLK
Links
Other
RRM
family RBPs
Other
Loa loa
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_52870
Brugia malayi
Bm1_52870
N
0.959
estExt_fgenesh2_pm.C_690014
Branchiostoma floridae
estExt_fgenesh2_pm.C_690014
I
0.705