estExt_fgenesh2_pm.C_690014 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pm.C_690014 T50948_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_690014 RRM 5 67
estExt_fgenesh2_pm.C_690014 RRM 121 186

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.860
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.860
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.837
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.822
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.822
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.822
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.822
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.822
SRSF4 Homo sapiens ENSG00000116350 I 0.822
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.822
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.822
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.822
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.822
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.822
Srsf4 Mus musculus ENSMUSG00000028911 I 0.822
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.822
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.822
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.822
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.822
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.822
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.822
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.822
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.822
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.822
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.822
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.822
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.822
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.822
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.814
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.814
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.798
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.798
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.798
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.798
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.798
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.791
SRSF6 Homo sapiens ENSG00000124193 I 0.791
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.791
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.791
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.791
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.791
AAH71160 Xenopus laevis AAH71160 I 0.791
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.791
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.791
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.791
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.791
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.791
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.791
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.791
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.791
Srsf6 Mus musculus ENSMUSG00000016921 I 0.791
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.783
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.783
Srsf5 Mus musculus ENSMUSG00000021134 I 0.783
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.783
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.783
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.783
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.783
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.783
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.783
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.783
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.783
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.783
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.783
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.783
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.783
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.783
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.783
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.783
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.783
srsf6a Danio rerio ENSDARG00000013729 I 0.783
srsf6b Danio rerio ENSDARG00000016783 I 0.783
LOC100053264 Equus caballus ENSECAG00000026873 I 0.783
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.783
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.783
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.783
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.783
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.783
AAH44085 Xenopus laevis AAH44085 I 0.783
SRSF5 Felis catus ENSFCAG00000008848 I 0.783
srsf5b Danio rerio ENSDARG00000027734 I 0.783
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.783
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.783
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.783
SRSF5 Homo sapiens ENSG00000100650 D 0.783
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.783
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.775
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.775
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.775
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.775
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.775
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.775
ISCW010321 Ixodes scapularis ISCW010321 I 0.775
srsf5a Danio rerio ENSDARG00000029818 I 0.775
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.775
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.775
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.775
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.775
AAH46668 Xenopus laevis AAH46668 I 0.775
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.775
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.767
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.767
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.767
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.767
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.767
GF17608 Drosophila ananassae FBgn0094626 I 0.760
GK13948 Drosophila willistoni FBgn0215954 I 0.760
PHUM290500 Pediculus humanus PHUM290500 I 0.760
B52 Drosophila melanogaster FBgn0004587 D 0.760
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.760
AGAP004592 Anopheles gambiae AGAP004592 I 0.760
GL23543 Drosophila persimilis FBgn0161133 I 0.752
GJ24113 Drosophila virilis FBgn0211197 I 0.752
GI22065 Drosophila mojavensis FBgn0144794 I 0.752
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.752
GH18528 Drosophila grimshawi FBgn0125995 I 0.752
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.752
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.752
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.752
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.752
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.752
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.752
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.752
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.752
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.752
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.752
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.744
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.744
AAH44265 Xenopus laevis AAH44265 I 0.744
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.744
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.744
62194 Helobdella robusta 62194 I 0.729
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.729
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.713
estExt_fgenesh2_pg.C_690104 Branchiostoma floridae estExt_fgenesh2_pg.C_690104 N 0.713
ISCW010322 Ixodes scapularis ISCW010322 I 0.713
ISCW014220 Ixodes scapularis ISCW014220 I 0.713
Bm1_52870 Brugia malayi Bm1_52870 N 0.713
ENSCING00000011362 Ciona intestinalis ENSCING00000011362 N 0.705
LOAG_10295 Loa loa LOAG_10295 N 0.705
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.705