CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIF35
(
Candida albicans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
orf19.7236
T29907_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
orf19.7236
RRM
199
270
LKVSQLNSFVDEDMLRNELFAKFGPLQRVTIVRNRETGESRGFAYVSFATEEIAQRALDTFNGKGYHSLILH
Links
Other
RRM
family RBPs
Other
Candida albicans
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cd36_13230
Candida dubliniensis
Cd36_13230
N
0.986
CTRG_03702
Candida tropicalis
CTRG_03702
N
0.958
LELG_03631
Lodderomyces elongisporus
LELG_03631
N
0.903
CPAG_04262
Candida parapsilosis
CPAG_04262
N
0.903
estExt_gwp_genewisePlus_worm.C_chr_1.11710
Pichia stipitis
estExt_gwp_genewisePlus_worm.C_chr_1.11710
N
0.889