CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_gwp_genewisePlus_worm.C_chr_1.11710
(
Pichia stipitis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_gwp_genewisePlus_worm.C_chr_1.11710
T51605_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_gwp_genewisePlus_worm.C_chr_1.11710
RRM
190
261
LKVSQLNSFVDEDMLRNELFARFGPLQRVTLVRNRETGDSRGFAYVSFITEDMAQRALDALNGKGYHSLILH
Links
Other
RRM
family RBPs
Other
Pichia stipitis
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIF35
Candida albicans
orf19.7236
N
0.889
LELG_03631
Lodderomyces elongisporus
LELG_03631
N
0.875
CTRG_03702
Candida tropicalis
CTRG_03702
N
0.875
CPAG_04262
Candida parapsilosis
CPAG_04262
N
0.875
Cd36_13230
Candida dubliniensis
Cd36_13230
N
0.875