CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PITG_03028
(
Phytophthora infestans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PITG_03028
T30130_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_03028T0
RRM
6
73
VYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGRDGYDYDGARLR
PITG_03028T0
RRM
107
168
VEVSNLPPRVSWQDLKDFMRKAGDVTFTEVDGRGGGVVEYSNKRDMKYAVEKLDDTEFRGRS
Links
Other
RRM
family RBPs
Other
Phytophthora infestans
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
s_440734
Phytophthora sojae
s_440734
N
0.962
gwEuk.27.51.1
Phytophthora ramorum
gwEuk.27.51.1
N
0.954
estExt_fgenesh1_kg.C_10700
Phytophthora capsici
estExt_fgenesh1_kg.C_10700
N
0.924