CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_440734
(
Phytophthora sojae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
s_440734
T53894_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_440734
RRM
533
600
VYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDPRDAEDAIRGRDGYDYDGARLR
s_440734
RRM
631
692
VEISNLPPRVSWQDLKDFMRKAGDVVFTEVDGRGGGIVEYSNKRDMKYAVEKLDDSEFRGRS
Links
Other
RRM
family RBPs
Other
Phytophthora sojae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PITG_03028
Phytophthora infestans
PITG_03028
N
0.962
gwEuk.27.51.1
Phytophthora ramorum
gwEuk.27.51.1
N
0.946
estExt_fgenesh1_kg.C_10700
Phytophthora capsici
estExt_fgenesh1_kg.C_10700
N
0.909