CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SJAG_00259
(
Schizosaccharomyces japonicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SJAG_00259
T30519_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SJAG_00259T0
RRM
208
278
VFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGFGYVDFDSPEAAKAAVAVNGQKEIDGRMVN
SJAG_00259T0
RRM
312
381
VFIGNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSIDAAKQCVEMNGHFIAGRPCR
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces japonicus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gar2
Schizosaccharomyces pombe
SPAC140.02
N
0.830
SOCG_00379
Schizosaccharomyces octosporus
SOCG_00379
N
0.809
SPOG_02126
Schizosaccharomyces cryophilus
SPOG_02126
N
0.794