CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gar2
(
Schizosaccharomyces pombe
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPAC140.02
T46158_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPAC140.02-1
RRM
265
335
VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN
SPAC140.02-1
RRM
368
437
VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCR
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces pombe
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SPOG_02126
Schizosaccharomyces cryophilus
SPOG_02126
N
0.851
SJAG_00259
Schizosaccharomyces japonicus
SJAG_00259
N
0.830
SOCG_00379
Schizosaccharomyces octosporus
SOCG_00379
N
0.823