CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPOG_03832
(
Schizosaccharomyces cryophilus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPOG_03832
T30770_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPOG_03832T0
RRM
13
83
IYLGNLDERVTDSILFELCLQAGPVGNIHIPRDRVRNSHNGFGFCEFVNERDAEYACQIFNQIKLYGKPLR
SPOG_03832T0
RRM
101
171
LFIGNLDPLVDERVLYDTFSALGQLIKAPQIVRDENGRSKGYGFVNFDSFDTADAAIEAMNNQFLMNKPIT
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces cryophilus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_01698
Schizosaccharomyces octosporus
SOCG_01698
N
0.958
sap49
Schizosaccharomyces pombe
SPAC31G5.01
N
0.880
SJAG_00504
Schizosaccharomyces japonicus
SJAG_00504
N
0.725