CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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sap49
(
Schizosaccharomyces pombe
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPAC31G5.01
T46174_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPAC31G5.01-1
RRM
13
83
IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIR
SPAC31G5.01-1
RRM
101
171
LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPIT
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces pombe
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SPOG_03832
Schizosaccharomyces cryophilus
SPOG_03832
N
0.880
SOCG_01698
Schizosaccharomyces octosporus
SOCG_01698
N
0.873
SJAG_00504
Schizosaccharomyces japonicus
SJAG_00504
N
0.775
PredSwiss_CON266.4
Pneumocystis carinii
PredSwiss_CON266.4
N
0.711
PredSwiss_ASS2010_2420.1
Pneumocystis carinii
PredSwiss_ASS2010_2420.1
N
0.711